Bioinformatics
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Selected Publications
- Quantitative Proteomic Profiling of
Prostate Cancer Reveals a Role for miR-128 in Prostate Cancer,
Molecular and Cellular Proteomics, (joint with Khan et al.)
- Leptin-mediated changes in hepatic
mitochondrial metabolism, structure, and protein levels, Proceedings
of the National Academies of the USA, 106, 13100-13105 (joint with A. Singh et
al.)
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Analysis of Gene Sets Based on the Underlying Regulatory Network, Journal of Computational Biology (2009), 407-426
(joint with Ali Shojaie)
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Coupled Global and Targeted Proteomics of Human Embryonic Stem Cells during Induced Differentiation, Molecular and Cellular Proteomics, (2008) 7(4), 750-767 (joint with Anastasia Yocum et al.)
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Early events of Bacillus anthracis germination identified by time-course quantitative proteomics, Proteomics (2006), 6(20), 5199-5211 (joint with Pratik Jagtap et al.)
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Differential Protein Expression Profiling by
iTRAQ-2DLC-MS/MS of Lung Cancer Cells Undergoing Epithelial-Mesenchymal
Transition Reveals a Migratory/Invasive Phenotype, Journal of Proteome
Research (2006), 5, 1143-1154 (joint with Venkat Keshamouni, Catie Grasso,
et al.)
- Immunoassay and antibody microarray analysis of
the HUPO Plasma Proteome Project reference specimens:
Systematic variation between sample types and calibration of mass spectrometry
data , Proteomics (2005), 5, 3278-3291 (joint with Brian Haab, Bernhard
Geierstanger, Frank Vitzhum, et al.)
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The Application of Rule-Based Methods to Class Prediction Problems in Genomics, Journal of Computational Biology (2003), 10, 689-698 (joint with Kerby Shedden)